Currently Available Modules
If you require a software package that is not currently available on the Oscar cluster, please contact ICERM's IT staff and we will work with CCV to get the software installed.
This list is current as of JanuaryMay 7,6, 2025. To see the most up to date list of software modules, log into your Oscar account and run the command module avail.
abaqus-container/2021-akaeexs filezilla/3.49.1-epfjuus mafft/7.505-iuicuiv qit/2023-04-04-grwuvgg
abaqus/2017-q4ghhm5 flashpca/2.0-zr2wflq magma-usyd/V2.28-8-p3zylpg qmcpack-mpi/3.16.0s-qp2hymx
abaqus/2021.1-i675dvw freebayes/1.3.6-v7rppcd magma/2.7.1-cpueyjy qscintilla/2.11.6-dq7zlcq
abaqus/2024-h5273a3 (D) freeglut/3.2.2-76qqoqn maple/22-cp2uld4 qt/5.15.9-fb7mjex
abaqus/2024-ir-a4m5ld5 freesurfer/7.3.2-zop5n6m mark/2018.07.08-43snzfu qualimap/2.2.1-mybpdoi
abaqus/2024-mbessa-ceayfuo freesurfer/8.0.0-jotmypd (D) materialstudio/2024s-gbc3dg6 quantum-espresso-mpi/7.1-gits-v4bxgtv
abaqus/2024.1-7pcdqhp fsl/6.0.7.7s-bul4mby mathematica/13.2.0-n4i6yua quantum-espresso-mpi/7.1s-ia43pjk
admixture/1.3.0-onwaqrp fv/5.5.2-g2ibb5x matlab/R2019a-rjyk3ws quantum-espresso-mpi/7.3s-kydgjwo (D)
afni/23.3.07s-zm43m3u fzf/0.45.0-pdwl7a4 matlab/R2023a-xd6f7ph (D) r/4.0.0-p7gxu4e
afni/24.2.01s-kstpoqt (D) gatk/4.3.0.0-234wqft matlab/R2024b-ipaztju r/4.0.3-pvf2znb
anaconda/2023.09-0-7nso27y gaussian/09_v1-u6klkps maven/3.8.4-w3zgh4v r/4.1.0-bfjsvw5
angsd/0.935-cbhuwc7 gaussian/09-D01_v2-tw73726 mercurial/5.8-vly6btb r/4.2.2-z6qdiis
ant/1.10.13-alpqj4j gaussian/09-D01-TEST_v3-vv6ar67 mesa/22.1.6-yi2tztm r/4.3.1-lmofgb4
ants/2.4.3-75npyop gaussian/16-C01-bb2r2gh (D) meson/1.6.0-eipcwzq r/4.4.0-yycctsj
aria2/1.36.0-lsb7zcs gaussview/v05-mkdyw6j metis/5.1.0-7qoahod r/4.4.2-re5rjx3 (D)
arm-forge/22.1.3-zq7lvdq gcc/6.5.0-lwshmxc miniconda3/23.11.0s-odstpk5 raisd/2.9-svyic22
armadillo/12.2.0-4clpczv gcc/10.1.0-mojgbnp miniforge/23.11.0-0s-hwmjdtj rclone/1.62.2-o4lkrv6
atom/1.19.3-ty5sdsn gcc/13.1.0-nvrtbp3 (D) minimap2/2.14-33hmvx2 readline/6.3-rnqups2
autoconf/2.69-p4rpdx2 gcm/2.4.1-lfqoarh molden/6.7-isryqwj readline/8.2-5xbuyjt (D)
autoconf/2.71-opdgqnq (D) gdal/3.7.0-4p4onmf molden/7.3-kytvh3m (D) root/6.28.04-u7t5ax7
avogadro2/1.99.0-5zl5qaw gdal/3.10.3-4vc4f76 (D) molpro-mpi/2023.2.0s-vyfv74n rsem/1.3.3-5obucw6
awscli/1.27.84-v22kngs geeqie/2.4-6vdnc4v molpro-mpi/2024.3.1-mpipr-hwakoux (D) rstudio/2023.09.1-lsqy746
bamtools/2.5.2-ki3mdef geos/3.11.2-a6hfu6a mpc/1.3.1-zbino7j ruby/3.1.0-gnoxsfm
basilisk/2023.11.11s-x4isdvp ghostscript/10.0.0-3atesdh mpfr/4.2.0-n2tkxso rust/1.73.0-647r2tw
bazel/6.1.1-vvtxktr gimp/2.10.32-tlknk2n mriconvert/2.1.0-oaq24fz rust/1.81.0-3qqoayc (D)
bbmap/39.01-jnnkpwk git-lfs/3.3.0-laphnvj mricrogl/2022.07.20-n3b7whc sage-container/10.3-avpqipf
bcftools/1.13-76jesdj git/2.44.0-6f7n7ni mricron/201909-3s2phrj sage/9.5-drpqjkh
bcftools/1.16-ewu6fpe (D) glew/2.2.0-plawm2j msmc2/2.1.4-cuac55f sage/10.3-nntihfr (D)
bcl2fastq2/2.20.0.422-z3wh636 glm/0.9.9.8-m3s6sze multiwfn/3.8_1208-qn65pif salmon/1.9.0-itdua6n
beagle/5.4-e43mqsa glpk/5.0-zifs7bb mummer4/4.0.0rc1-4llgadq salmon/1.10.1-43ljn7g (D)
bedops/2.4.40-bjb2v2n gmap-gsnap/2024-08-20-dur7jyc muscle/3.8.1551-pys2b76 samtools/1.12-4v4uiz6
bedtools2/2.31.0-lsohc7s gmp/6.2.1-qlaig4m mysql/8.0.29-w7xdbde samtools/1.16.1-txuglks (D)
bismark/0.23.0-eoksupu gnuplot/5.4.3-pdiiquy nanoflann/1.4.3-u2l24dv sas/9.4m8-f2f3xdp
blast-legacy/2.2.26-tcdku3a go/1.17.1-f4mqosa nbo/7.0-phausw3 schmutzi-container/1.5.7-vsorpcq
blast-plus/2.2.30-cyxldrt go/1.20.3-xknmcqd nccl/2.16.2-1-gjmprw5 schmutzi-container/1.5.7-3imwf7h (D)
blat/37-ebfj5e6 go/1.23.3-d3wvs6z (D) ncdu/1.18.1-uofylp6 schrodinger/2023-4-h3kvbn3
blender/4.4.0-446jdgt google-cloud-cli/456.0.0-3mtj4z6 nco/5.1.5-36hru5t schrodinger/2024-1-yqi27-m4qqm46 (D)
boost/1.80.0-harukoy gperf/3.1-56q4xf5 ncview/2.1.8-nxepxtw scons/4.5.2-housgyw
bowtie/1.3.1-2kd7din grace/5.1.25-duvo7rn neovim/0.9.4-67stov2 seqkit/0.10.1-qtiftw4
bowtie2/2.4.2-xdquyzq graphviz/8.0.1-75znavc neovim/0.10.4-7b4mer5 (D) seqtk/1.3-kbdjwob
bowtie2/2.5.3-qgscc2u (D) gsl/2.7.1-khmyfcy netcdf-c/4.9.2-cfggqwi shapeit4/4.2.2-3us45un
brotli/1.0.9-h22dril guppy/6.0.1-wpaqayj netcdf-c/4.9.2-4ozokng (D) singular/4.4.0-aeloppr
bwa/0.7.17-lu4b4dj guppy/6.1.2-wwvvdfu (D) netcdf-cxx4/4.3.1-6gcdg5s skewer/0.2.2-nwhklgr
bxh-xcede-tools-container/1.11.14-4sphv7n gurobi/10.0.1-q7rc5dw netcdf-fortran/4.6.0-kl27oji slicer/5.4.0-rb2kk4l
cadence/IC06.18-calibre2022.2-ascb7dw hdf5/1.12.2-s6aacp3 netcdf/4.9.2-ar77jpt slim/4.0.1-kymgtmu
cadence/IC06.18.090-6famfci hdf5/1.14.1-2-rdd6y6v (D) netlib-lapack/3.11.0-jdzmstx slim/4.3-u22vcwu (D)
cadence/IC23.10.000-ppqll2n (D) hisat2/2.2.1-gn4pb3l netlogo/6.4.0-psm765m spdlog/1.11.0-qbi24my
casa/6.6.0-20-py3.8.el7-dqvn5lw homer/4.11.1-fpjs4l4 netpbm/10.73.43-m2jdopk splash/2.1.4-unrsfpj
cdhit/4.8.1-bqmf4jf hpcx-mpi/4.1.5rc2-mts-ukpby4i ngc-jax/23.10-paxml-py3-ziphcif spm/8-77b5myx
cellranger/arc-2.0.1-uamrhhu hpcx-mpi/4.1.5rc2s-yflad4v (D) ngc-pytorch/24.03-py3-a6ptiby spm/12_r7606-prcq7fg (D)
cellranger/atac-2.0.0-m2tfcpk htop/3.2.2-kqsjlaj ngc-tensorflow/24.03-tf2-py3-lmnuwwg sratoolkit/3.0.0-u4jvgps
cellranger/6.0.0-dbztt7r (D) htslib/1.12-ecidzx4 ninja/1.11.1-k2aq3rl stacks/2.65-geg4r7a
cfitsio/4.2.0-5grfqtu htslib/1.17-zxcat2k (D) nlopt/2.7.1-fwj27pk star/2.7.10b-fj6kao2
cgal/5.4.1-64mikhl idba/1.1.3-nrxiqtw nnn/4.9-r7kawsv stata/mp17-v7a7uoo
chrome/119.0.6045.159s-avadhvk idemp/201706-a45gc3d node-js/18.12.1-qkps4za stata/mp18-3wq5b4o (D)
cli11/2.3.2-pcucv7l idl/8.9s-jocgnbh nvhpc/23.3-xa4nyqi stow/2.4.0-y2q7tsn
clustal-omega/1.2.4-mbj3dq5 igraph/0.7.1-wbiepb3 nvhpc/23.7-alnzdzw stringtie/2.2.1-7uti3ny
cmake/3.6.1-il7bkvj imagej/154-linux64-java8-jd6sflr nvhpc/25.1-scvc2ac (D) sublime-text/4.4143-im3loi3
cmake/3.26.3-xi6h36u (D) imagemagick/7.1.1-3-ex4k4u2 nvtop/3.0.1-7r22pjl subread/2.0.2-5agghnd
cnvnator/0.4.1-w3bkqjf inkscape/1.3s-gshcpwc octopus-lunter/0.7.4-kkqrfv3 swig/4.1.1-bq46cxl
code-server/4.20.0-tcrmrcm intel-oneapi-compilers/2023.1.0-a7fw7qt ollama/0.3.14s-a3gonhs synopsys/2023.12-df4a3ab
code-server/4.97.2-33bvsj5 (D) intel-oneapi-mkl/2023.1.0-xbcd2g3 ollama/0.5.12s-mjarasi (D) synopsys/2024.09-q3jwzot (D)
colordiff/1.0.21-ifskyqr intltool/0.51.0-vanhjsr openbabel/3.1.1-nay2mkb tabix/2013-12-16-d6qvxp7
comsol/5.2-ufifhtv iq-tree/2.1.3-gu64b4j openblas/0.3.23-u6k5fey tcl/8.6.12-dziqp2l
lines 1-66
---- /oscar/runtime/software/spack/0.20.1/share/spack/lmod/linux-rhel9-x86_64/Core ----
abaqus-container/2021-akaeexs
abaqus/2017-q4ghhm5
abaqus/2021.1-i675dvw
abaqus/2024-h5273a3 (D)
abaqus/2024-ir-a4m5ld5
abaqus/2024-mbessa-ceayfuo
abaqus/2024.1-7pcdqhp
admixture/1.3.0-onwaqrp
afni/23.3.07s-zm43m3u
afni/24.2.01s-kstpoqt (D)
anaconda/2023.09-0-7nso27y
angsd/0.935-cbhuwc7
ant/1.10.13-alpqj4j
ants/2.4.3-75npyop
aria2/1.36.0-lsb7zcs
arm-forge/22.1.3-zq7lvdq
armadillo/12.2.0-4clpczv
atom/1.19.3-ty5sdsn
autoconf/2.69-p4rpdx2
avogadro2/1.99.0-5zl5qaw
awscli/1.27.84-v22kngs
bamtools/2.5.2-ki3mdef
basilisk/2023.11.11s-x4isdvp
bazel/6.1.1-vvtxktr
bbmap/39.01-jnnkpwk
bcftools/1.13-76jesdj
bcftools/1.16-ewu6fpe (D)
bcl2fastq2/2.20.0.422-z3wh636
beagle/5.4-e43mqsa
bedops/2.4.40-bjb2v2n
bedtools2/2.31.0-lsohc7s
bismark/0.23.0-eoksupu
blast-legacy/2.2.26-tcdku3a
blast-plus/2.2.30-cyxldrt
blat/37-ebfj5e6
blender/4.0.0s-v667vhv
boost/1.80.0-harukoy
bowtie/1.3.1-2kd7din
bowtie2/2.4.2-xdquyzq
bowtie2/2.5.3-qgscc2u (D)
brotli/1.0.9-h22dril
bwa/0.7.17-lu4b4dj
bxh-xcede-tools-container/1.11.14-4sphv7n
cadence/IC06.18-calibre2022.2-ascb7dw
cadence/IC06.18.090-6famfci
cadence/IC23.10.000-ppqll2n (D)
casa/6.6.0-20-py3.8.el7-dqvn5lw
cdhit/4.8.1-bqmf4jf
cellranger/arc-2.0.1-uamrhhu
cellranger/atac-2.0.0-m2tfcpk
cellranger/6.0.0-dbztt7r (D)
cfitsio/4.2.0-5grfqtu
cgal/5.4.1-64mikhl
chrome/119.0.6045.159s-avadhvk
cli11/2.3.2-pcucv7l
clustal-omega/1.2.4-mbj3dq5
cmake/3.6.1-il7bkvj
cmake/3.26.3-xi6h36u (D)
cnvnator/0.4.1-w3bkqjf
code-server/4.20.0-tcrmrcm
colordiff/1.0.21-ifskyqr
comsol/5.2-ufifhtv
comsol/5.6_yqi27-jnspqto
comsol/6.3_yqi27-7yf67lt (D)
conn/22a-nztrdv3
connectome-workbench/1.5.0-t66riqu
cppunit/1.14.0-h3hsjgu
crossrate-container/2016-27ofi4r
cuda/10.1.243-bxisbai
cuda/10.2.89-xnfjmrt
cuda/11.8.0-lpttyok
cuda/12.1.1-ebglvvq
cuda/12.2.0-4lgnkrh
cuda/12.3.0-r72aozf (D)
cudnn/7.5.1.10-10.1-hv4e2lt
cudnn/8.7.0.84-11.8-lg2dpd5
cudnn/8.9.6.50-12-56zgdoa (D)
cufflinks/2.2.1-ogzw3z5
cutensor/1.5.0.3-gqkzath
datamash/1.8-ib4aakp
dcm2niix/1.0.20220720-nwsidfo
diamond/2.0.15-h7xx24l
dicombrowser/20181217s-ikvqhyr
dlib/19.22-lxah7rq
dmtcp/3.0.0-xvfukfp
dorado/0.8.2-s42dhri
dos2unix/7.4.2-5a6dlgt
dotnet/8.0.100-5lr7bga
dropest/0.8.6-ewwx5ik
ds/9.8.5s-zpqg2jy
dsi-studio/chen-2023-sif-lytwlk2
dtitk/2.3.1s-bp7yqjh
eigen/3.4.0-uycckhi
eigensoft/7.2.1-6ctbhoz
emacs/28.2-rwds2pd
expat/2.5.0-zujcztp
fastme/2.1.5.1-kmg5til
fastp/0.23.4-xmfbk37
fastq-screen/0.15.3-7ymgrux
fastqc/0.11.9-mvd2uhw
fastqc/0.12.1-sk2rb3a (D)
fasttree/2.1.11-o5kvig7
fastx-toolkit/0.0.14-zhaxiyn
ferret/7.6.0-rzhafh6
ffmpeg/6.0-fy677gn
ffmpeg/7.0-xny2fb2 (D)
fiji/20231107-1617-espdc7g
filezilla/3.49.1-epfjuus
flashpca/2.0-zr2wflq
freebayes/1.3.6-v7rppcd
freeglut/3.2.2-76qqoqn
freesurfer/7.3.2-zop5n6m
fsl/6.0.7.7s-bul4mby
fv/5.5.2-g2ibb5x
fzf/0.45.0-pdwl7a4
gatk/4.3.0.0-234wqft
gaussian/09_v1-u6klkps
gaussian/09-D01_v2-tw73726
gaussian/09-D01-TEST_v3-vv6ar67
gaussian/16-C01-bb2r2gh (D)
gaussview/v05-mkdyw6j
gcc/6.5.0-lwshmxc
gcc/10.1.0-mojgbnp
gcc/13.1.0-nvrtbp3 (D)
gcm/2.4.1-lfqoarh
gdal/3.7.0-4p4onmf
geeqie/2.4-6vdnc4v
geos/3.11.2-a6hfu6a
ghostscript/10.0.0-3atesdh
gimp/2.10.32-tlknk2n
git-lfs/3.3.0-laphnvj
git/2.44.0-6f7n7ni
glew/2.2.0-plawm2j
glm/0.9.9.8-m3s6sze
glpk/5.0-zifs7bb
gmap-gsnap/2024-08-20-dur7jyc
gmp/6.2.1-qlaig4m
gnuplot/5.4.3-pdiiquy
go/1.17.1-f4mqosa
go/1.20.3-xknmcqd
go/1.23.3-d3wvs6z (D)
google-cloud-cli/456.0.0-3mtj4z6
gperf/3.1-56q4xf5
grace/5.1.25-duvo7rn
graphviz/8.0.1-75znavc
gsl/2.7.1-khmyfcy
guppy/6.0.1-wpaqayj
guppy/6.1.2-wwvvdfu (D)
gurobi/10.0.1-q7rc5dw
hdf5/1.12.2-s6aacp3
hdf5/1.14.1-2-rdd6y6v (D)
hisat2/2.2.1-gn4pb3l
homer/4.11.1-fpjs4l4
hpcx-mpi/4.1.5rc2-mts-ukpby4i
hpcx-mpi/4.1.5rc2s-yflad4v (D)
htop/3.2.2-kqsjlaj
htslib/1.12-ecidzx4
htslib/1.17-zxcat2k (D)
idba/1.1.3-nrxiqtw
idemp/201706-a45gc3d
idl/8.8.2-d5p4srq
igraph/0.7.1-wbiepb3
imagej/154-linux64-java8-jd6sflr
imagemagick/7.1.1-3-ex4k4u2
inkscape/1.3s-gshcpwc
intel-oneapi-compilers/2023.1.0-a7fw7qt
intel-oneapi-mkl/2023.1.0-xbcd2g3
intltool/0.51.0-vanhjsr
iq-tree/2.1.3-gu64b4j
iq-tree/2.3.6-fn5vscb (D)
iraf/2.17.1s-2r7ypc5
itk-snap-container/4.0.2-bychj73
jags/4.3.1-4mvaxc3
jellyfish/2.2.7-dywzm7z
jo/1.9-ki7xc2u
json-fortran/8.3.0-ehkzpjv
jsoncpp/1.9.5-vhsa2iy
julia/1.9.3s-i3zndt3
julia/1.11.1s-kueea5s (D)
kraken/1.1.1-e6r2aej
lemon/1.3.1-jh3h4xt
leptonica/1.81.0-pebiyok
leveldb/1.23-f76iwfr
lftp/4.9.2-vimt4vf
libarchive/3.6.2-mnc5shn
libbeef/Nov2020-xhrdwg5
libdeflate/1.10-5yi7m3g
libgd/2.2.4-2iyhgxa
libgd/2.3.3-ubu4k2f (D)
libgeotiff/1.6.0-voueb6b
libgit2/1.6.4-a432pgi
libiconv/1.17-jwjcds2
libjpeg-turbo/2.1.5-sewtk5u
libjpeg/9e-6djp5nd
libnsl/1.3.0-calriiy
libnsl/2.0.1-ed2i5hn (D)
libpng/1.2.57s-lve65hz
libpng/1.5.30-ru3zswz
libpng/1.6.39-ryxiwrd (D)
libreoffice/7.2.2.sif-drpjygp
libsdl/2.30.7-4rxs72s
libtiff/4.5.0-g6fga7e
libtree/3.1.1-yxst452
libvips/8.13.3-ex4pfpg
libwnck/3.24.1-4gvyjhg
libxc/4.3.4-uy5ogwb
libxc/5.2.3-ncc5ir4 (D)
libzip/1.3.2-qwqikw6
liggghts/3.8.0s-rqph5mk
linaro-forge/23.1.2-pk2lobu
llvm/16.0.2-mq6g5lb
lmod/8.7.24-w2akdkb
mafft/7.505-iuicuiv
magma-usyd/V2.28-8-p3zylpg
magma/2.7.1-cpueyjy
maple/22-cp2uld4
mark/2018.07.08-43snzfu
materialstudio/2024s-gbc3dg6
mathematica/13.2.0-n4i6yua
matlab/R2019a-rjyk3ws
matlab/R2023a-xd6f7ph (D)
matlab/R2024b-ipaztju
maven/3.8.4-w3zgh4v
mercurial/5.8-vly6btb
mesa/22.1.6-6dbg5gq
meson/1.6.0-eipcwzq
metis/5.1.0-7qoahod
miniconda3/23.11.0s-odstpk5
miniforge/23.11.0-0s-hwmjdtj
minimap2/2.14-33hmvx2
molden/6.7-isryqwj
molden/7.3-kytvh3m (D)
molpro-mpi/2023.2.0s-vyfv74n
molpro-mpi/2024.3.1-mpipr-hwakoux (D)
mpc/1.3.1-zbino7j
mpfr/4.2.0-n2tkxso
mriconvert/2.1.0-oaq24fz
mricrogl/2022.07.20-n3b7whc
mricron/201909-3s2phrj
msmc2/2.1.4-cuac55f
multiwfn/3.8_1208-qn65pif
mummer4/4.0.0rc1-4llgadq
muscle/3.8.1551-pys2b76
mysql/8.0.29-w7xdbde
nanoflann/1.4.3-u2l24dv
nbo/7.0-phausw3
nccl/2.16.2-1-gjmprw5
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